ID/Diagnostic: Multiple
Morphological: Pathogen may be identified morphologically by examination of the shape and size of conidia and conidiophores, color and type of colony, and temperature requirements (Samra et al., 1963).
PCR primers have been developed for differentiating H. maydis (=Cephalosporium maydis) from some of its relatives (Acremonium, Cephalosporium, Gaeumannomcyes, and Phialophora) (Saleh and Leslie, 2004). The PCR assay can be used as a preliminary screen for potential morphological positives. Final confirmation would occur via PCR and sequencing at a national diagnostic laboratory.
Update: Two diagnostic assays have been developed for Harpophora maydis, causal agent of late wilt of maize, by CPHST Beltsville. They are currently being validated and subjected to a ring test with a collaborator in Israel, where H. maydis is an established plant pathogen. Work Instructions for both the conventional and qPCR assays have been written, and are in the process of being reviewed prior to their approval for general use in CPHST. Both of the conventional PCR and qPCR assays target a segment of the Ribosomal Internal Transcribed Spacer (ITS) of H. maydis. The conventional PCR assay has been optimized as a stand-alone (singleplex) assay. The ITS region of H. maydis has been cloned into a pCR2.1-TOPO vector and constitutes the positive control for this assay. The qPCR assay has been optimized as a stand-alone (singleplex) assay, and as a multiplex assay combining a diagnostic PCR assay specific for H. maydis, and an internal control (IC) assay targeting a known plant DNA locus (COX). We expect to have these Work Instructions validated by the collaborator in Israel before the end of FY-2013, and be released for screening in FY-2014.
In Progress / Literature-based Diagnostics:
Molecular: Culture the fungus in complete medium (CM) broth and incubate on an orbital shaker for 3 days at room temperature. Harvest mycelia for DNA extraction.
Ward and Bateman (1999) use a pair of PCR primers that amplify a segment of the ribosomal gene locus from many members of the Gaeumannomyces and Phialophora fungal pathogens from maize and other host plants. The PCR product from Harpophora maydis (=Cephalosporium maydis) can be distinguished from that of other members of the group on the basis of its unique size (490 bp) relative to that of other species.